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Foldit: Gaming for a cure

Two years ago, a team from UW including CSE professor Zoran Popovic, CSE grad student Seth Cooper, and UW Biochemistry professor (and adjunct CSE professor) David Baker, launched an ambitious project harnessing the brainpower of computer gamers to solve medical problems.

“The game, Foldit, turns one of the hardest problems in molecular biology into a game a bit reminiscent of Tetris. Thousands of people have now played a game that asks them to fold a protein rather than stack colored blocks or rescue a princess.

“Results published Thursday (Aug. 5) in the journal Nature show that Foldit is a success. It turns out that people can, indeed, compete with supercomputers in this arena. Analysis shows that players bested the computers on problems that required radical moves, risks and long-term vision — the kinds of qualities that computers do not possess.”

Read the UW News article here. TechFlash here. Nature here.

Additional coverage:  Wired. CosmicLog on MSNBC.com. Discover MagazineArs TechnicaTechNewsDaily.    Popular ScienceScience NewsScientific American Seattle TimesLos Angeles TimesThe EconomistPC WorldCNETCBS NewsUPIGizmag. HPCwireNewScientistDie PressePhysics TodayForbesThe EconomistThe Economist:  Technology Babbage blogMacleans.ca. Read more →

MIT Stata Center equipped with colostomy bag

In the latest desperate attempt to deal with leaks, a plastic bag collects water that drips through a 4th floor skylight and directs it to a hose, attached to a stairway railing by means of cable ties, which terminates at a trash can at the foot of the stairs.  Engineering ingenuity in action! Read more →

“Refraction” wins Grand Prize in Disney Learning Challenge

Refraction, an online puzzle game for teaching fractions created by UW CSE professor Zoran Popovic and his students, has won the Grand Prize in the Disney Learning Challenge!

Refraction is a research project of UW CSE’s Center for Game Science — focused on games for learning and for science. Read more →

New York Times Magazine: Does the Web Ever Forget?

We’ve known for years that the Web allows for unprecedented voyeurism, exhibitionism and inadvertent indiscretion, but we are only beginning to understand the costs of an age in which so much of what we say, and of what others say about us, goes into our permanent – and public – digital files.

UW CSE computer scientist Yoshi Kohno, who helped develop the system Vanish to make online data that self-destructs, is quoted.

Read the NYT article here. A recent ZDNet article on the Vanish system is here. Read more →

New York Times: Bye-Bye Batteries

In a story in the Novelties column on the New York Times, reporter Anne Eisenberg looks at work that’s being done to entirely eliminate batteries from very low-power wireless systems.

UW Electrical Engineering Professor Brian Otis explained that researchers are working on the problem from two directions, and are now starting to meet in the middle, delivering practical applications. His work is on reducing the amount of power such systems require, while others, such as UW CSE affiliate professor Joshua Smith, are working on harvesting useful amounts of power from ambient radiation.

Smith, who is a principal engineer at Intel Labs Seattle, and his research collaborators have demonstrated a system that harvests enough power from a nearby television broadcast station to run a simple wireless weather station. Says Smith, “Silicon technology has advanced to the point where even tiny amounts of energy can do useful work.”

Read the full story at the New York Times online here. CSE News earlier reported on media coverage of Smith’s work here. Read more →

“A Kitchen Countertop with a Brain”

A depth-sensing camera and a palm-top projector turn an ordinary work surface into an interactive one.  UW CSE graduate student Ryder Ziola developed this system, dubbed Oasis, with researchers at Intel Labs Seattle, led by Intel senior scientist and CSE affiliate faculty member Beverly Harrison.

“If you put, for example, a steak on the surface, it will recognize the steak and come up with a recipe,” says Ziola. “It may also come up with nutritional information.'” The camera can also track the motion of a person’s hand, and discern when he is touching the surface or not, allowing the surface to be interactive.

Read full Technology Review article here. Read more →

“King County, Wash.’s Open Data Turned Into Real-Time Bus Tracking App”

UW CSE Ph.D. student Brian Ferris saw the need for better public transit information. So in his spare time, he wrote code that’s now used for OneBusAway — an open source application that aggregates bus data in real time.

King County officials hope others will also take advantage of their raw data to build useful apps, like Ferris did, and plan to make hundreds of additional data sources available.

Ferris is now studying how his app has changed transportation behavior as part of his Ph.D. work.  “OneBusAway users are more satisfied with public transit, spend less time waiting, take transit more frequently and feel safer at bus stops,” he said. “People actually reported walking more.”

Read the full article in Government Technology here. Read more →

“Shrewd search engines know what you want”

Search engines have a dark side, and they form a vital part of hackers’ toolkits. For instance, once a potential website vulnerability emerges, a quick web search can gather a list of all sites which have that security flaw in their web code.

How better to hunt down hackers than by setting the search engines themselves on them, asks UW CSE Ph.D. student John John.  With colleagues at Microsoft Research Silicon Valley, John has developed SearchAudit, a system that uses the Bing search engine – and the hackers’ own known malicious queries – as guides to malicious sites and forums.

Reach the NewScientist article here. Read more →

“Ocean Observatories Will Make Use of CENIC and Pacific NorthWest GigaPoP 10-Gigabit Peerings with Amazon Web Services”

“When a national network of ocean observatories begins streaming environmental sensor data in March 2012, researchers … will be able to use … high-speed academic networks to transmit some of that data to storage and computing clouds operated by Amazon Web Services.

“CENIC and PNWGP today announced two 10 Gigabit per second (Gbps) connections to Amazon Simple Storage Service (Amazon S3) and Amazon Elastic Compute Cloud (Amazon EC2) for the use of CENIC’s members in California, as well as PNWGP’s multistate K-20 research and education community. With these new ultra-high-performance peering connections, members of CENIC and PNWGP can take full advantage of those services, whether for K-12 education or for university-based research …

“’21st century discovery will be driven by the automated analysis of massive amounts of sensor data captured from the world around us,’ said Ed Lazowska, the Bill & Melinda Gates Chair in Computer Science & Engineering and Director of the eScience Institute at UW.  ‘The focus is on data, more than cycles. Cloud resources are an essential component.  The direct connections to the Amazon Web Services cloud from CENIC and PNWGP provide scientists with the bandwidth they need to utilize these resources.'”

Read the full announcement here. Read more →

UW CSE Ph.D. alum Doug Downey is 2010 Microsoft Research Faculty Fellow

Each year, roughly half a dozen faculty members from across the nation are selected as Microsoft Research Faculty FellowsDoug Downey, a Ph.D. student of Oren Etzioni’s now on the faculty at Northwestern University, has just been announced as a 2010 recipient of this significant distinction.

“Doug Downey studies methods for automatically extracting knowledge from the World Wide Web. His work aims to enable advanced Web search engines, capable of answering complex questions by synthesizing information across multiple Web pages. Building on techniques from natural language processing, machine learning, and artificial intelligence, Downey is currently investigating how to harness human interaction to improve knowledge extraction systems.”

Congratulations Doug! Read more →

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